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Subject: [Fwd: [docbook-apps] Potential Bug in DocBook XML 4.4CR2, docbook.catfile]
Hi,
There is error in SGML catalog file for DocBook XML 4.4CR2. I fixed it
in CVS sources but it probably means that we (Norm ;-) should release
another CR.
Jirka
-------- Original Message --------
Subject: [docbook-apps] Potential Bug in DocBook XML 4.4CR2, docbook.cat
file
Date: Thu, 9 Dec 2004 10:57:16 -0500
From: Tristan Fiedler <fiedler@cshl.edu>
To: docbook-apps@lists.oasis-open.org
References: <B9FE4B8A-4975-11D9-A111-000D933B5D9E@cshl.edu>
Hi All,
Using docbook-xml-4.4CR2, found the following potential bug : (I
fixed it by changing each occurrence of 'iso-' in the docbook.cat to
'iso' (ie removed hyphen).
Original problem :
I noticed that two different filenames are used : isoamsa.ent and
iso-amsa.ent
docbook-xml-4.4CR2/catalog.xml: uri="ent/isoamsa.ent"/>
docbook-xml-4.4CR2/dbcentx.mod:"ent/isoamsa.ent">
docbook-xml-4.4CR2/ent/isoamsa.ent: File isoamsa.ent produced by
the XSL script entities.xsl
docbook-xml-4.4CR2/ent/isoamsa.ent: Version: $Id: isoamsa.ent,v 1.2
2003/12/08 15:14:43 davidc Exp $
docbook-xml-4.4CR2/ent/isoamsa.ent: System identifier:
http://www.w3.org/2003/entities/iso8879/isoamsa.ent
docbook-xml-4.4CR2/ent/isoamsa.ent:
"http://www.w3.org/2003/entities/iso8879/isoamsa.ent";
versus
docbook-xml-4.4CR2/docbook.cat: "ent/iso-amsa.ent"
When I edit the second line below from iso-amsa.ent to isoamsa.ent (as
shown), the problem appears solved, but the next file 'iso-amsb.ent' is
not found.
From docbook.cat in docbook-xml-4.4CR2 :
PUBLIC "ISO 8879:1986//ENTITIES Added Math Symbols: Arrow
Relations//EN//XML"
"ent/isoamsa.ent"
PUBLIC "ISO 8879:1986//ENTITIES Added Math Symbols: Binary
Operators//EN//XML"
"ent/iso-amsb.ent"
-------------------------------------------
New error :
Resolved public: ISO 8879:1986//ENTITIES Added Math Symbols: Arrow
Relations//EN//XML
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.4CR2/ent/
isoamsa.ent
Resolved public: ISO 8879:1986//ENTITIES Added Math Symbols: Binary
Operators//EN//XML
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.4CR2/ent/
iso-amsb.ent
Failed to create InputSource:
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.4CR2/ent/
iso-amsb.ent
Error on line 312 column 1 of
file:/Users/fiedler/Celegans_DocBook/Samples/Mosaics/
GeneticMosaics_test1.xml:
Error reported by XML parser: Cannot read from
file:/Users/fiedler/Celegans_DocBook/Samples/Mosaics/ent/isoamsb.ent
(/Users/fiedler/Celegans_DocBook/Samples/Mosaics/ent/isoamsb.ent (No
such file or directory))
Transformation failed: Run-time errors were reported
-----------------------------------------
Does this need to done for each of these 'hyphenated' .ent files in
docbook.cat?
When I changed each 'iso-' to 'iso' , Saxon was able to properly create
the desired html output :
Mosaics$ java com.icl.saxon.StyleSheet -x
org.apache.xml.resolver.tools.ResolvingXMLReader -y
org.apache.xml.resolver.tools.ResolvingXMLReader -r
org.apache.xml.resolver.tools.CatalogResolver -u -o classyMos.html
GeneticMosaics_test1.xml docbook.xsl
Tristan
------------------------------
Tristan J. Fiedler
Postdoctoral Fellow - Stein Lab
Cold Spring Harbor Laboratory
On Dec 8, 2004, at 7:03 PM, Tristan Fiedler wrote:
> Hi DocBook gurus,
>
> Using Bob Stayton's XSL online guide, I have set up the catalog.xml
> and CatalogManager.properties files. However, somewhere the path to
> htmltblx.mod is incorrect. When I run :
>
> Mosaics$ java com.icl.saxon.StyleSheet -x
> org.apache.xml.resolver.tools.ResolvingXMLReader -y
> org.apache.xml.resolver.tools.ResolvingXMLReader -r
> org.apache.xml.resolver.tools.CatalogResolver -u -o classyMos.html
> GeneticMosaics_test1.xml docbook.xsl
>
> I get this error :
>
> Error on line 3599 column 1 of
> file:/Users/fiedler/Celegans_DocBook/Samples/Mosaics/
> GeneticMosaics_test1.xml:
> Error reported by XML parser: Cannot read from
> file:/Users/fiedler/Celegans_DocBook/Samples/Mosaics/htmltblx.mod
> (/Users/fiedler/Celegans_DocBook/Samples/Mosaics/htmltblx.mod (No such
> file or directory))
> Transformation failed: Run-time errors were reported
>
> I do indeed however have a file in my docbook-xml-4.3 directory named
> : htmltblx.mod
>
> The catalog file looks like :
>
> <?xml version="1.0"?>
> <!DOCTYPE catalog
> PUBLIC "-//OASIS/DTD Entity Resolution XML Catalog V1.0//EN"
>
> "http://www.oasis-open.org/committees/entity/release/1.0/catalog.dtd";>
>
> <catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
>
> <!-- DTD and stylesheet files installed under /usr/share/xml -->
> <group xml:base="file:///Users/fiedler/Celegans_DocBook/software/" >
>
> <!-- Resolve DTD URL system ID to local file -->
> <rewriteSystem
>
> systemIdStartString="http://www.oasis-open.org/docbook/xml/4.3b2/";
> rewritePrefix="docbook-xml-4.3/" />
> <!-- Resolve stylesheet URL to local file -->
> <rewriteURI
>
> uriStartString="http://docbook.sourceforge.net/release/xsl/current/";
> rewritePrefix="docbook-xsl-1.67.2/" />
>
> <!-- Resolve DTD PUBLIC identifiers -->
>
> <public
> publicId="-//OASIS//DTD DocBook XML V4.3//EN"
> uri="docbook-xml-4.3/docbookx.dtd"/>
>
> <!-- To resolve DTD SYSTEM identifiers. -->
>
> <system
> systemId="docbookx.dtd"
> uri="docbook-xml-4.3/docbookx.dtd"/>
>
> <!-- To resolve short stylesheet references -->
> <uri
> name="docbook.xsl"
> uri="docbook-xsl-1.67.2/html/docbook.xsl" />
> <uri
> name="chunk.xsl"
> uri="docbook-xsl-1.67.2/html/chunk.xsl" />
> <uri
> name="fo-docbook.xsl"
> uri="docbook-xsl-1.67.2/fo/docbook.xsl" />
>
> </group>
>
> </catalog>
>
>
> and the CatalogManager.properties file looks like :
>
> catalogs=catalog.xml;./docbook-xml-4.3/docbook.cat
> relative-catalogs=false
> static-catalog=yes
> catalog-class-name=org.apache.xml.resolver.Resolver
> verbosity=1
>
>
> If someone could suggest a solution, I would appreciate it.
>
>
> Cheers,
>
> Tristan
> ------------------------------
> Tristan J. Fiedler
> Postdoctoral Fellow - Stein Lab
> Cold Spring Harbor Laboratory
--
------------------------------------------------------------------
Jirka Kosek e-mail: jirka@kosek.cz http://www.kosek.cz
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