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Subject: Re: [office-metadata] Linking in a vocabulary


Patrick,

Still not done, but getting closer.

Clinic Note.n3

Clinic Note.odt

Clinic Note.rdf

<?xml version="1.0" encoding="UTF-8"?>
<office:document-content office:version="1.0" xml:id="id-Whole-Document"
    xmlns:chart="urn:oasis:names:tc:opendocument:xmlns:chart:1.0"
    xmlns:dc="http://purl.org/dc/elements/1.1/";
    xmlns:dom="http://www.w3.org/2001/xml-events";
    xmlns:dr3d="urn:oasis:names:tc:opendocument:xmlns:dr3d:1.0"
    xmlns:draw="urn:oasis:names:tc:opendocument:xmlns:drawing:1.0"
    xmlns:fo="urn:oasis:names:tc:opendocument:xmlns:xsl-fo-compatible:1.0"
    xmlns:form="urn:oasis:names:tc:opendocument:xmlns:form:1.0"
    xmlns:math="http://www.w3.org/1998/Math/MathML";
    xmlns:meta="urn:oasis:names:tc:opendocument:xmlns:meta:1.0"
    xmlns:number="urn:oasis:names:tc:opendocument:xmlns:datastyle:1.0"
    xmlns:office="urn:oasis:names:tc:opendocument:xmlns:office:1.0"
    xmlns:ooo="http://openoffice.org/2004/office";
    xmlns:oooc="http://openoffice.org/2004/calc";
    xmlns:ooow="http://openoffice.org/2004/writer";
    xmlns:script="urn:oasis:names:tc:opendocument:xmlns:script:1.0"
    xmlns:style="urn:oasis:names:tc:opendocument:xmlns:style:1.0"
    xmlns:svg="urn:oasis:names:tc:opendocument:xmlns:svg-compatible:1.0"
    xmlns:table="urn:oasis:names:tc:opendocument:xmlns:table:1.0"
    xmlns:text="urn:oasis:names:tc:opendocument:xmlns:text:1.0"
    xmlns:xforms="http://www.w3.org/2002/xforms";
    xmlns:xlink="http://www.w3.org/1999/xlink";
    xmlns:xsd="http://www.w3.org/2001/XMLSchema";
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";>
    <office:scripts/>
    <office:font-face-decls>
        <style:font-face style:font-family-generic="roman"
            style:font-pitch="variable" style:name="Times New Roman"
            svg:font-family="&apos;Times New Roman&apos;"/>
        <style:font-face style:font-family-generic="swiss"
            style:font-pitch="variable" style:name="Arial"
            svg:font-family="Arial"/>
        <style:font-face style:font-family-generic="system"
            style:font-pitch="variable" style:name="MS Mincho"
            svg:font-family="&apos;MS Mincho&apos;"/>
        <style:font-face style:font-family-generic="system"
            style:font-pitch="variable" style:name="Tahoma"
            svg:font-family="Tahoma"/>
    </office:font-face-decls>
    <office:automatic-styles>
        <style:style style:family="paragraph" style:list-style-name="L1"
            style:name="P1" style:parent-style-name="Standard"/>
        <style:style style:family="paragraph" style:list-style-name="L2"
            style:name="P2" style:parent-style-name="Standard"/>
        <style:style style:family="paragraph" style:list-style-name="L3"
            style:name="P3" style:parent-style-name="Standard"/>
        <style:style style:family="section" style:name="Sect1">
            <style:section-properties style:editable="false">
                <style:columns fo:column-count="0" fo:column-gap="0in"/>
            </style:section-properties>
        </style:style>
        <text:list-style style:name="L1">
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="1">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="0.25in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="2">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="0.5in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="3">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="0.75in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="4">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="5">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1.25in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="6">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1.5in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="7">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1.75in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="8">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="2in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="9">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="2.25in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="10">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="2.5in"/>
            </text:list-level-style-number>
        </text:list-style>
        <text:list-style style:name="L2">
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="1">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="0.25in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="2">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="0.5in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="3">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="0.75in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="4">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="5">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1.25in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="6">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1.5in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="7">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1.75in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="8">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="2in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="9">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="2.25in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="10">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="2.5in"/>
            </text:list-level-style-number>
        </text:list-style>
        <text:list-style style:name="L3">
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="1">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="0.25in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="2">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="0.5in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="3">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="0.75in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="4">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="5">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1.25in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="6">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1.5in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="7">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="1.75in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="8">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="2in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="9">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="2.25in"/>
            </text:list-level-style-number>
            <text:list-level-style-number style:num-format="1"
                style:num-suffix="." text:level="10">
                <style:list-level-properties text:min-label-width="0.25in"
                    text:space-before="2.5in"/>
            </text:list-level-style-number>
        </text:list-style>
    </office:automatic-styles>
    <office:body>
        <office:text>
            <text:sequence-decls>
                <text:sequence-decl text:display-outline-level="0"
                    text:name="Illustration"/>
                <text:sequence-decl text:display-outline-level="0"
                    text:name="Table"/>
                <text:sequence-decl text:display-outline-level="0"
                    text:name="Text"/>
                <text:sequence-decl text:display-outline-level="0"
                    text:name="Drawing"/>
            </text:sequence-decls>
            <text:section text:name="Header" text:style-name="Sect1"
                xml:id="id-Header-Section">
                <text:p text:style-name="Standard">Patient: <text:meta-field
                        xml:id="id-Patient-Name">SMITH, JOHN</text:meta-field>
                    <text:s text:c="2"/><text:meta-field xml:id="id-Patient-ID"
                        >A12345</text:meta-field></text:p>
                <text:p text:style-name="Standard">Dictated Rpt: <text:s/>Final
                        <text:s text:c="3"/><text:meta-field xml:id="id-Date"
                        >01/23/2007 00:00</text:meta-field></text:p>
                <text:p text:style-name="Standard">
                    <text:meta-field xml:id="id-DocDescription">Clinic Annual
                        Visit</text:meta-field>
                </text:p>
                <text:p text:style-name="Standard">DOB: <text:meta-field
                        xml:id="id-Patient-Bday">1/1/1950</text:meta-field>
                    <text:s/>Age: 57</text:p>
                <text:p text:style-name="Standard">
                    <text:meta-field xml:id="id-Doctor-Name">Sam Jones,
                    MD</text:meta-field>
                </text:p>
                <text:p text:style-name="Standard"/>
                <text:p text:style-name="Standard"/>
            </text:section>
            <text:section text:name="ProblemList" text:style-name="Sect1"
                xml:id="id-ProblemList-Section">
                <text:p text:style-name="Standard">PROBLEM LIST: <text:s/></text:p>
                <text:p text:style-name="Standard"/>
                <text:list text:style-name="L1">
                    <text:meta-field xml:id="id-Problem-List">
                        <text:list-item>
                            <text:p text:style-name="P1">
                                <text:meta-field xml:id="id-Problem-1">
                                    Hyperlipidemia</text:meta-field>.</text:p>
                        </text:list-item>
                        <text:list-item>
                            <text:p text:style-name="P1"><text:meta-field
                                    xml:id="id-Problem-2">
                                Hypertension</text:meta-field>. </text:p>
                        </text:list-item>
                    </text:meta-field>
                </text:list>
                <text:p text:style-name="Standard"/>
                <text:p text:style-name="Standard"/>
            </text:section>
            <text:section text:name="Medications" text:style-name="Sect1"
                xml:id="id-Medications-Section">
                <text:p text:style-name="Standard">MEDICATIONS:</text:p>
                <text:p text:style-name="Standard"/>
                <text:list text:style-name="L2">
                    <text:meta-field xml:id="id-Meds-List">
                        <text:list-item>
                            <text:p text:style-name="P2">
                                <text:meta-field xml:id="id-Rx-1">
                                    <text:meta-field xml:id="id-Rx-1-drug"
                                        >Lovastatin</text:meta-field>
                                    <text:meta-field xml:id="id-Rx-1-dose">20 mg
                                        daily</text:meta-field>
                                </text:meta-field>
                            </text:p>
                        </text:list-item>
                        <text:list-item>
                            <text:p text:style-name="P2">
                                <text:meta-field xml:id="id-Rx-2">
                                    <text:meta-field xml:id="id-Rx-2-drug"
                                        >Chlorthalidone</text:meta-field>
                                    <text:meta-field xml:id="id-Rx-2-dose">25 mg
                                        daily</text:meta-field>
                                </text:meta-field>
                            </text:p>
                        </text:list-item>
                    </text:meta-field>
                </text:list>
                <text:p text:style-name="Standard"/>
                <text:p text:style-name="Standard"/>
            </text:section>
            <text:section text:name="Allergies" text:style-name="Sect1"
                xml:id="id-Allergies-Section">
                <text:p text:style-name="Standard">ALLERGIES/SENSITIVITIES:
                    <text:s/></text:p>
                <text:p text:style-name="Standard"/>
                <text:p text:style-name="Standard">
                    <text:meta-field xml:id="id-Allergy-1"><text:meta-field
                            xml:id="id-Allergy-1-substance">Sulfa
                        drugs</text:meta-field> (<text:meta-field
                            xml:id="id-Allergy-1-manifestation"
                        >rash</text:meta-field>)</text:meta-field>
                </text:p>
                <text:p text:style-name="Standard"/>
                <text:p text:style-name="Standard"/>
            </text:section>
            <text:section text:name="History" text:style-name="Sect1"
                xml:id="id-History-Section">
                <text:p text:style-name="Standard">INTERVAL HISTORY: </text:p>
                <text:p text:style-name="Standard">...</text:p>
                <text:p text:style-name="Standard"/>
            </text:section>
            <text:section text:name="PhysicalExam" text:style-name="Sect1"
                xml:id="id-PhysExam-Section">
                <text:p text:style-name="Standard">PHYSICAL EXAMINATION: </text:p>
                <text:p text:style-name="Standard"/>
                <text:meta-field xml:id="id-Vital-Signs">
                    <text:p text:style-name="Standard">VITALS: <text:s
                            text:c="10"/>T: <text:meta-field
                            xml:id="id-BodyTemp">36.2</text:meta-field>, P:
                            <text:meta-field xml:id="id-Pulse"
                        >63</text:meta-field>, R: <text:meta-field
                            xml:id="id-Resp">12</text:meta-field>, BP:
                            <text:meta-field xml:id="id-BP"><text:meta-field
                                xml:id="id-systolic"
                                >135</text:meta-field>/<text:meta-field
                                xml:id="diastolic"
                        >88</text:meta-field></text:meta-field></text:p>
                </text:meta-field>
                <text:p text:style-name="Standard"/>
                <text:p text:style-name="Standard">...</text:p>
                <text:p text:style-name="Standard"/>
            </text:section>
            <text:section text:name="AssessmentPlan" text:style-name="Sect1"
                xml:id="id-AssessPlan-Section">
                <text:p text:style-name="Standard">ASSESSMENT/PLAN: <text:s
                        text:c="2"/></text:p>
                <text:p text:style-name="Standard"/>
                <text:list text:style-name="L3">
                    <text:list-item>
                        <text:p text:style-name="P3">
                            <text:meta-field xml:id="id-Plan-1">Hyperlipidemia -
                                He will stay on lovastatin 20 mg daily.
                                <text:s/>I think I would like to see his LDL
                                cholesterol below 100.</text:meta-field>
                        </text:p>
                    </text:list-item>
                    <text:list-item>
                        <text:p text:style-name="P3">
                            <text:meta-field xml:id="id-Plan-2">Hypertension –
                                Continue chlorthalidone. Weight loss and
                                exercise is encouraged.</text:meta-field>
                        </text:p>
                    </text:list-item>
                </text:list>
                <text:p text:style-name="Standard"/>
                <text:p text:style-name="Standard"/>
            </text:section>
            <text:section text:name="Signature" text:style-name="Sect1"
                xml:id="id-Signature-Section">
                <text:p text:style-name="Standard">Sam Jones, MD, FACP</text:p>
                <text:p text:style-name="Standard">ELECTRONICALLY SIGNED ON</text:p>
                <text:p text:style-name="Standard">January 26, 2007 AT 2:31:58
                    PM</text:p>
            </text:section>
        </office:text>
    </office:body>
</office:document-content>

(1) The odt is just an OpenOffice save of the un-doctored document.

(2) The content.xml has all the necessary xml:id's added to it, and  
is therefore a mock-up of what that would look like **for the case of  
non-inline metadata***.

(3) The RDF is close to, but not yet exactly what you would need to  
put in the odf package as the non-inline metadata rdf file (there are  
e.g. some "fake" SNOMED codes and incorrect IRI's).

(4) The N3 was used to compose the RDF, and it has lots of comments  
to help clarify (I hope) what my (semantic) intentions were.

(5) I have NOT yet gotten very far into the in-line metadata version,  
but keep your hopes up for tomorrow.

John





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